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TetraRNA, a tetra-class machine learning model for deciphering the coding potential derivation of RNA world 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2025, 卷号: 27, 期号: x, 页码: 1305-1317
Authors:  Bai, Hanrui;  Wang, Jie;  Jiang, Xiaoke;  Guo, Zhen;  Yang, Wenjing;  Yang, Zitian;  Li, Jing;  Liu, Changning
Adobe PDF(7282Kb)  |  Favorite  |  View/Download：6/1  |  Submit date：2025/05/21
Translated ncRNA  Untranslated mRNA  CncRNA  Tetra-class classification model  TetraRNADB database  
Splicing defect of StDRO2 intron 1 promotes potato root growth by disturbing auxin transport to adapt to drought stress 期刊论文
HORTICULTURAL PLANT JOURNAL, 2025, 卷号: 11, 期号: 2, 页码: 706-720
Authors:  Zhao, Jianping;  Yao, Baolin;  Peng, Ziai;  Yang, Xinyue;  Li, Kuixiu;  Zhang, Xiaoyan;  Zhu, Haiyan;  Zhou, Xuan;  Wang, Meixian;  Jiang, Lihui;  He, Xie;  Liang, Yan;  Zhan, Xiaoping;  Wang, Xiaoran;  Dai, Yuliang;  Yang, Yanfen;  Yang, Ao;  Dong, Man;  Shi, Suni;  Lu, Man;  Zhao, Yi;  Shen, Mingyun;  Guo, Liwei;  Liu, Changning;  Zhang, Hongji;  Yu, Decai;  Du, Yunlong
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Potato  Root system architecture  StDRO2  Drought stress  Auxin  Splicing  MicroRNA  
Multidimensional analysis of long noncoding RNAs function in Solanaceae plants 期刊论文
NEW PHYTOLOGIST, 2025, 卷号: 247, 期号: 3, 页码: 1041-1059
Authors:  Yang, Wenjing;  Bai, Quanzi;  Zhang, Xuan;  Chen, Wen;  Cai, Ankang;  Li, Jing;  Gao, Xiaoyang;  Yao, Baolin;  Liu, Jiazhi;  Li, Yan;  Chen, Jianghua;  Liu, Changning
Adobe PDF(4116Kb)  |  Favorite  |  View/Download：11/5  |  Submit date：2025/07/10
FRUIT-DEVELOPMENT  EXPRESSION  LNCRNAS  TRANSCRIPTOME  ARABIDOPSIS  ANNOTATION  PROFILES  NETWORK  GROWTH  ROLES  
GRAS transcription factor PINNATE-LIKE PENTAFOLIATA2 controls compound leaf morphogenesis in Medicago truncatula 期刊论文
PLANT CELL, 2024, 页码: -
Authors:  He, Liangliang;  Liu, Ye;  Mao, Yawen;  Wu, Xinyuan;  Zheng, Xiaoling;  Zhao, Weiyue;  Mo, Xiaoyu;  Wang, Ruoruo;  Wu, Qinq;  Wang, Dongfa;  Li, Youhan;  Yang, Yuanfan;  Bai, Quanzi;  Zhang, Xiaojia;  Zhou, Shaoli;  Zhao, Baolin;  Liu, Changning;  Liu, Yu;  Tadege, Million;  Chen, Jianghua
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EupDB: An integrative and comprehensive functional genomics data hub for Euphorbiaceae plants 期刊论文
PLANT COMMUNICATIONS, 2024, 卷号: 5, 期号: 1, 页码: -
Authors:  Liu, Jiazhi;  Li, Yan;  Li, Jing;  Chen, Wen;  Pan, Bangzhen;  Liu, Aizhong;  Xu, Zeng-Fu;  Xu, Wei;  Liu, Changning
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CRISPRlnc: a machine learning method for lncRNA-specific single-guide RNA design of CRISPR/Cas9 system 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2024, 卷号: 25, 期号: 2, 页码: _
Authors:  Yang, Zitian;  Zhang, Zexin;  Li, Jing;  Chen, Wen;  Liu, Changning
Adobe PDF(2743Kb)  |  Favorite  |  View/Download：6/2  |  Submit date：2024/07/22
CRISPR/Cas9  machine learning  lncRNA  sgRNA  
Salicylic acid inhibits rice endocytic protein trafficking mediated by OsPIN3t and clathrin to affect root growth 期刊论文
PLANT JOURNAL, 2023, 期号: x, 页码: -
Authors:  Jiang, Lihui;  Yao, Baolin;  Zhang, Xiaoyan;  Wu, Lixia;  Fu, Qijing;  Zhao, Yiting;  Cao, Yuxin;  Zhu, Ruomeng;  Lu, Xinqi;  Huang, Wuying;  Zhao, Jianping;  Li, Kuixiu;  Zhao, Shuanglu;  Han, Li;  Zhou, Xuan;  Luo, Chongyu;  Zhu, Haiyan;  Yang, Jing;  Huang, Huichuan;  Zhu, Zhengge;  He, Xiahong;  Friml, Jiri;  Zhang, Zhongkai;  Liu, Changning;  Du, Yunlong
Adobe PDF(5495Kb)  |  Favorite  |  View/Download：11/5  |  Submit date：2023/06/09
AUXIN TRANSPORT  GRAIN-SIZE  STRESS-RESPONSE  EXPRESSION  RESISTANCE  GENE  PERCEPTION  ANGLE  
A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering 期刊论文
PLANT JOURNAL, 2023, 期号: x, 页码: -
Authors:  Zhao, Jiu-Xia;  Wang, Shu;  Liu, Jiazhi;  Jiang, Xiao-Dong;  Wen, Jing;  Suo, Zhi-Quan;  Liu, Jie;  Zhong, Mi-Cai;  Wang, Qin;  Gu, Zhirong;  Liu, Changning;  Deng, Yunfei;  Hu, Jin-Yong;  Li, De-Zhu
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perennial monocarpic mass flowering  Strobilanthes  ISO-seq  RNA-seq  BlueOmics  
The MIO1-MtKIX8 module regulates the organ size in Medicago truncatula 期刊论文
PHYSIOLOGIA PLANTARUM, 2023, 卷号: 175, 期号: 5, 页码: _
Authors:  Mao, Yawen;  Zhou, Shaoli;  Yang, Jing;  Wen, Jiangqi;  Wang, Dongfa;  Zhou, Xuan;  Wu, Xinyuan;  He, Liangliang;  Liu, Mingli;  Wu, Huan;  Yang, Liling;  Zhao, Baolin;  Tadege, Million;  Liu, Yu;  Liu, Changning;  Chen, Jianghua
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Epigenetic modifications: Allusive clues of lncRNA functions in plants 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2023, 卷号: 21, 期号: x, 页码: 1989-1994
Authors:  Yang, Wenjing;  Bai, Quanzi;  Li, Yan;  Chen, Jianghua;  Liu, Changning
Adobe PDF(1453Kb)  |  Favorite  |  View/Download：7/2  |  Submit date：2023/04/25
LncRNA  Epigenetic regulation  Epigenomes  Plant