| A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering | |
Zhao, Jiu-Xia; Wang, Shu1,2; Liu, Jiazhi1,3; Jiang, Xiao-Dong; Wen, Jing1; Suo, Zhi-Quan; Liu, Jie1; Zhong, Mi-Cai; Wang, Qin2; Gu, Zhirong4; Liu, Changning3 ; Deng, Yunfei2,5; Hu, Jin-Yong; Li, De-Zhu
| |
| 2023 | |
| Source Publication | PLANT JOURNAL
 |
| ISSN | 0960-7412 |
| Issue | xPages:- |
| Abstract | Perennial monocarpic mass flowering represents as a key developmental innovation in flowering time diver-sity in several biological and economical essential families, such as the woody bamboos and the shrubby Strobilanthes. However, molecular and genetic mechanisms underlying this important biodiversity remain poorly investigated. Here, we generated a full-length transcriptome resource incorporated into the BlueO-mics database (http://blueomics.iflora.cn) for two Strobilanthes species, which feature contrasting flowering time behaviors. Using about 112 and 104 Gb Iso-seq reads together with similar to 185 and similar to 75 Gb strand-specific RNA seq data, we annotated 80 971 and 79 985 non-redundant full-length transcripts for the perennial polycarpic Strobilanthes tetrasperma and the perennial monocarpic Strobilanthes biocullata, respectively. In S. tetrasperma, we identified 8794 transcripts showing spatiotemporal expression in nine tissues. In leaves and shoot apical meristems at two developmental stages, 977 and 1121 transcripts were differen-tially accumulated in S. tetrasperma and S. biocullata, respectively. Interestingly, among the 33 transcrip-tion factors showing differential expression in S. tetrasperma but without differential expression in S. biocullata, three were involved potentially in the photoperiod and circadian-clock pathway of flowering time regulation (FAR1 RELATED SEQUENCE 12, FRS12; NUCLEAR FACTOR Y A1, NFYA1; PSEUDO-RESPONSE REGULATOR 5, PRR5), hence provides an important clue in deciphering the flowering diversity mechanisms. Our data serve as a key resource for further dissection of molecular and genetic mechanisms underpinning key biological innovations, here, the perennial monocarpic mass flowering. |
| Keyword | perennial monocarpic mass flowering Strobilanthes ISO-seq RNA-seq BlueOmics |
| Subject Area | Plant Sciences |
| DOI | http://dx.doi.org/10.1111/tpj.16452 |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:001061282200001 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | https://ir.xtbg.ac.cn/handle/353005/13844 |
| Collection | 2012年后新成立研究组 |
| Affiliation | 1.Chinese Acad Sci, Kunming Inst Bot, CAS Key Lab Plant Divers & Biogeog East Asia, Yunnan Key Lab Crop Wild Relat Om, Kunming 650201, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Chinese Acad Sci, Key Lab Plant Resources Conservat & Sustainable Ut, South China Bot Garden, Guangzhou 510650, Peoples R China 4.Chinese Acad Sci, CAS Key Lab Trop Plant Resources & Sustainable Use, Yunnan Key Lab Crop Wild Relat Om, Xishuangbanna Trop Bot Garden, Kunming 650223, Peoples R China 5.Adm Natl Nat Reserve Badagongshan, Sangzhi 427000, Hunan, Peoples R China 6.Chinese Acad Sci, Ctr Conservat Biol, Core Bot Gardens, Guangzhou 510650, Peoples R China 7.Chinese Acad Sci, Kunming Inst Bot, Yunnan Key Lab Crop Wild Relat Om, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China |
| Recommended Citation GB/T 7714 | Zhao, Jiu-Xia,Wang, Shu,Liu, Jiazhi,et al. A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering[J]. PLANT JOURNAL,2023(x):-. |
| APA | Zhao, Jiu-Xia.,Wang, Shu.,Liu, Jiazhi.,Jiang, Xiao-Dong.,Wen, Jing.,...&Li, De-Zhu.(2023).A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering.PLANT JOURNAL(x),-. |
| MLA | Zhao, Jiu-Xia,et al."A comparative full-length transcriptomic resource provides insight into the perennial monocarpic mass flowering".PLANT JOURNAL .x(2023):-. |
| Files in This Item: | Download All | |||||
| File Name/Size | DocType | Version | Access | License | ||
| A comparative full-l（3055KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.
Edit Comment