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The F-box protein SlSAP1 and SlSAP2 redundantly control leaf and fruit size by modulating the stability of SlKIX8 and SlKIX9 in tomato 期刊论文
NEW PHYTOLOGIST, 2025, 期号: x, 页码: -
Authors:  Li, Wenju;  Liu, Mingli;  Wang, Renyin;  He, Liangliang;  Zhou, Shaoli;  Zhao, Baolin;  Mao, Yawen;  Wu, Qing;  Wang, Dongfa;  Ji, Xiaomin;  Yang, Jing;  Xie, Xiaoting;  Liu, Yu;  Wu, Shuang;  Chen, Jianghua;  Yang, Liling
Adobe PDF(6591Kb)  |  Favorite  |  View/Download：128/82  |  Submit date：2025/05/21
fruit size  SlKIX8  SlKIX9  SlSAP1  SlSAP2  tomato  ubiquitination pathway  
Multidimensional analysis of long noncoding RNAs function in Solanaceae plants 期刊论文
NEW PHYTOLOGIST, 2025, 卷号: 247, 期号: 3, 页码: 1041-1059
Authors:  Yang, Wenjing;  Bai, Quanzi;  Zhang, Xuan;  Chen, Wen;  Cai, Ankang;  Li, Jing;  Gao, Xiaoyang;  Yao, Baolin;  Liu, Jiazhi;  Li, Yan;  Chen, Jianghua;  Liu, Changning
Adobe PDF(4116Kb)  |  Favorite  |  View/Download：99/57  |  Submit date：2025/07/10
FRUIT-DEVELOPMENT  EXPRESSION  LNCRNAS  TRANSCRIPTOME  ARABIDOPSIS  ANNOTATION  PROFILES  NETWORK  GROWTH  ROLES  
Hydraulic architecture, height-related changes in photosynthesis and seasonal positive pressure declines in bamboo: implications for top dieback 期刊论文
ANNALS OF BOTANY, 2025, 卷号: x, 期号: x, 页码: -
Authors:  Guo, Wen;  Feng, Jing-Qiu;  Zhang, Jiao-Lin;  Fan, Ze-Xin;  Fu, Pei-Li;  Cochard, Herve;  Zhang, Yong-Jiang;  Yang, Shi-Jian
Adobe PDF(3795Kb)  |  Favorite  |  View/Download：91/12  |  Submit date：2025/07/10
XYLEM VESSEL DIAMETER  WATER RELATIONS  WOODY ANGIOSPERMS  MAXIMUM HEIGHT  ROOT PRESSURE  GAS-EXCHANGE  TREE HEIGHT  TRADE-OFFS  CONDUITS  TRAITS  
TetraRNA, a tetra-class machine learning model for deciphering the coding potential derivation of RNA world 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2025, 卷号: 27, 期号: x, 页码: 1305-1317
Authors:  Bai, Hanrui;  Wang, Jie;  Jiang, Xiaoke;  Guo, Zhen;  Yang, Wenjing;  Yang, Zitian;  Li, Jing;  Liu, Changning
Adobe PDF(7282Kb)  |  Favorite  |  View/Download：60/11  |  Submit date：2025/05/21
Translated ncRNA  Untranslated mRNA  CncRNA  Tetra-class classification model  TetraRNADB database  
Ginger genome reveals the SMPED1 gene causing sex-phase synchrony and outcrossing in a flowering plant 期刊论文
NATURE PLANTS, 2025, 期号: x, 页码: -
Authors:  Zhao, Jian-Li;  Dong, Yang;  Huang, Ao-Dan;  Duan, Sheng-Chang;  Peng, Xiao-Chang;  Liao, Hong;  Chen, Jiang-Hua;  Luo, Yin-Ling;  Lan, Qin-Ying;  Wang, Ya-Li;  Wang, Wen-Jing;  Zhu, Xin-Meng;  Luo, Pei-Wen;  Xia, Xue;  Li, Bo;  Kress, W. John;  Han, Jia-Jia;  Barrett, Spencer C. H.;  Chen, Wei;  Li, Qing-Jun
Adobe PDF(16989Kb)  |  Favorite  |  View/Download：33/15  |  Submit date：2025/11/12
SELF-INCOMPATIBILITY  EVOLUTION  MODEL  DICHOGAMY  HETERODICHOGAMY  INHERITANCE  ANGIOSPERMS  POLLINATION  ALIGNMENT  POLLEN  
Genome analyses provide insights into Engelhardia's adaptation to East Asia summer monsoon 期刊论文
PLANT DIVERSITY, 2025, 卷号: 47, 期号: 5, 页码: 718-732
Authors:  Li, Min;  Wu, Jing-Jing;  Su, Ren-Ping;  Fang, Ou-Yan;  Cai, Xiang;  Huang, Pei-Han;  Gao, Xiao-Yang;  Fu, Xin-Xing;  Ma, Xiao-Hui;  He, Lin-Yue;  Song, Yi-Gang;  Hu, Guo-Xiong;  Zhou, Shi-Shun;  Tan, Yun-Hong;  van de Peer, Yves;  Li, Jie;  Wu, Sheng-Dan;  Meng, Hong-Hu
Adobe PDF(12004Kb)  |  Favorite  |  View/Download：24/3  |  Submit date：2025/11/12
Engelhardia  Comparative genomics  Genome evolution  EBLFs  TPS  EASM  
A Near Telomere-To-Telomere Genome Assembly of Coffea arabica (Mundo Novo) Provides Insights Into Its Secondary Metabolism 期刊论文
MOLECULAR ECOLOGY RESOURCES, 2025, 页码: -
Authors:  Liu, Yi;  Zong, Hang;  Xing, Yaowu;  Jiao, Xi;  Liu, Zhuoya;  Niu, Yusheng;  Yang, Zhiling;  Liu, Shimeng;  Wang, Yongqiang;  Zhao, Haodong;  Chen, Xianqing;  Li, Zhenzhu;  Wang, Xiao;  Cai, Jing;  Wang, Wen;  Wang, Zhongkai
Adobe PDF(4590Kb)  |  Favorite  |  View/Download：33/25  |  Submit date：2025/11/12
Arabica coffee  NMTs  Reb M  secondary metabolism  T2T genome assembly  UGTs  
DNA Barcoding Reveals Cryptic Diversity and Informs Conservation Priorities in Chinese Firmiana Species (Malvaceae) Using Genome Skimming DataDNA () : 期刊论文
INTEGRATIVE CONSERVATION, 2025, 期号: x, 页码: -
Authors:  Yan, Li-Jun;  Li, Ruo-Zhu;  Xiao, Yun-Xue;  Corlett, Richard T.;  Liu, Yan;  Yu, Zhi-Xiang;  Luo, Rong-Sheng;  Yang, Jing;  Yu, Wen-Bin
Adobe PDF(8316Kb)  |  Favorite  |  View/Download：82/17  |  Submit date：2025/11/24
conservation  DNA barcode  identification  phylogeny  plastome  DNA  
Conservation Gap Within a Nature Reserve: A Case Study in the Biodiversity Hotspot of Rare and Endangered Plants at the Southern Gaoligong Mountains 期刊论文
INTEGRATIVE CONSERVATION, 2025, 卷号: 4, 期号: 1, 页码: 71-84
Authors:  Yang, Yong-Jing-Wen;  Hu, Xin-Run;  Deng, Min;  Tan, Yun-Hong
Adobe PDF(2664Kb)  |  Favorite  |  View/Download：20/9  |  Submit date：2025/11/24
gap analysis  InVEST  land use  random forest (RF)  the southern Gaoligong Mountains  
CRISPRlnc: a machine learning method for lncRNA-specific single-guide RNA design of CRISPR/Cas9 system 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2024, 卷号: 25, 期号: 2, 页码: _
Authors:  Yang, Zitian;  Zhang, Zexin;  Li, Jing;  Chen, Wen;  Liu, Changning
Adobe PDF(2743Kb)  |  Favorite  |  View/Download：66/36  |  Submit date：2024/07/22
CRISPR/Cas9  machine learning  lncRNA  sgRNA