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TetraRNA, a tetra-class machine learning model for deciphering the coding potential derivation of RNA world 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2025, 卷号: 27, 期号: x, 页码: 1305-1317
Authors:  Bai, Hanrui;  Wang, Jie;  Jiang, Xiaoke;  Guo, Zhen;  Yang, Wenjing;  Yang, Zitian;  Li, Jing;  Liu, Changning
Adobe PDF(7282Kb)  |  Favorite  |  View/Download：6/1  |  Submit date：2025/05/21
Translated ncRNA  Untranslated mRNA  CncRNA  Tetra-class classification model  TetraRNADB database  
The F-box protein SlSAP1 and SlSAP2 redundantly control leaf and fruit size by modulating the stability of SlKIX8 and SlKIX9 in tomato 期刊论文
NEW PHYTOLOGIST, 2025, 期号: x, 页码: -
Authors:  Li, Wenju;  Liu, Mingli;  Wang, Renyin;  He, Liangliang;  Zhou, Shaoli;  Zhao, Baolin;  Mao, Yawen;  Wu, Qing;  Wang, Dongfa;  Ji, Xiaomin;  Yang, Jing;  Xie, Xiaoting;  Liu, Yu;  Wu, Shuang;  Chen, Jianghua;  Yang, Liling
Adobe PDF(6591Kb)  |  Favorite  |  View/Download：11/4  |  Submit date：2025/05/21
fruit size  SlKIX8  SlKIX9  SlSAP1  SlSAP2  tomato  ubiquitination pathway  
Multidimensional analysis of long noncoding RNAs function in Solanaceae plants 期刊论文
NEW PHYTOLOGIST, 2025, 卷号: 247, 期号: 3, 页码: 1041-1059
Authors:  Yang, Wenjing;  Bai, Quanzi;  Zhang, Xuan;  Chen, Wen;  Cai, Ankang;  Li, Jing;  Gao, Xiaoyang;  Yao, Baolin;  Liu, Jiazhi;  Li, Yan;  Chen, Jianghua;  Liu, Changning
Adobe PDF(4116Kb)  |  Favorite  |  View/Download：11/5  |  Submit date：2025/07/10
FRUIT-DEVELOPMENT  EXPRESSION  LNCRNAS  TRANSCRIPTOME  ARABIDOPSIS  ANNOTATION  PROFILES  NETWORK  GROWTH  ROLES  
Hydraulic architecture, height-related changes in photosynthesis and seasonal positive pressure declines in bamboo: implications for top dieback 期刊论文
ANNALS OF BOTANY, 2025, 卷号: x, 期号: x, 页码: -
Authors:  Guo, Wen;  Feng, Jing-Qiu;  Zhang, Jiao-Lin;  Fan, Ze-Xin;  Fu, Pei-Li;  Cochard, Herve;  Zhang, Yong-Jiang;  Yang, Shi-Jian
Adobe PDF(3795Kb)  |  Favorite  |  View/Download：9/1  |  Submit date：2025/07/10
XYLEM VESSEL DIAMETER  WATER RELATIONS  WOODY ANGIOSPERMS  MAXIMUM HEIGHT  ROOT PRESSURE  GAS-EXCHANGE  TREE HEIGHT  TRADE-OFFS  CONDUITS  TRAITS  
Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance 期刊论文
NATURE GENETICS, 2024, 页码: -
Authors:  Ma, Peng-Fei;  Liu, Yun-Long;  Guo, Cen;  Jin, Guihua;  Guo, Zhen-Hua;  Mao, Ling;  Yang, Yi-Zhou;  Niu, Liang-Zhong;  Wang, Yu-Jiao;  Clark, Lynn G.;  Kellogg, Elizabeth A.;  Xu, Zu-Chang;  Ye, Xia-Ying;  Liu, Jing-Xia;  Zhou, Meng-Yuan;  Luo, Yan;  Yang, Yang;  Soltis, Douglas E.;  Bennetzen, Jeffrey L.;  Soltis, Pamela S.;  Li, De-Zhu
Adobe PDF(32149Kb)  |  Favorite  |  View/Download：12/6  |  Submit date：2024/05/09
Dipterocarpoidae genomics reveal their demography and adaptations to Asian rainforests 期刊论文
NATURE COMMUNICATIONS, 2024, 卷号: 15, 期号: 1, 页码: -
Authors:  Wang, Rong;  Liu, Chao-Nan;  Segar, Simon T.;  Jiang, Yu-Ting;  Zhang, Kai-Jian;  Jiang, Kai;  Wang, Gang;  Cai, Jing;  Chen, Lu-Fan;  Chen, Shan;  Cheng, Jing;  Compton, Stephen G.;  Deng, Jun-Yin;  Ding, Yuan-Yuan;  Du, Fang K.;  Hu, Xiao-Di;  Hu, Xing-Hua;  Kang, Ling;  Li, Dong-Hai;  Lu, Ling;  Li, Yuan-Yuan;  Tang, Liang;  Tong, Xin;  Wang, Zheng-Shi;  Xu, Wei-Wei;  Yang, Yang;  Zang, Run-Guo;  Zu, Zhuo-Xin;  Zhang, Yuan-Ye;  Chen, Xiao-Yong
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Genome-Wide Identification and Expression Analysis of the PHD Finger Gene Family in Pea (Pisum sativum) 期刊论文
PLANTS-BASEL, 2024, 卷号: 13, 期号: 11, 页码: _
Authors:  Liu, Mingli;  Li, Wenju;  Zheng, Xiaoling;  Yuan, Zhuo;  Zhou, Yueqiong;  Yang, Jing;  Mao, Yawen;  Wang, Dongfa;  Wu, Qing;  He, Yexin;  He, Liangliang;  Zong, Dan;  Chen, Jianghua
Adobe PDF(6036Kb)  |  Favorite  |  View/Download：7/4  |  Submit date：2024/07/22
Pisum sativum  PHD finger  gene family  anther development  
CRISPRlnc: a machine learning method for lncRNA-specific single-guide RNA design of CRISPR/Cas9 system 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2024, 卷号: 25, 期号: 2, 页码: _
Authors:  Yang, Zitian;  Zhang, Zexin;  Li, Jing;  Chen, Wen;  Liu, Changning
Adobe PDF(2743Kb)  |  Favorite  |  View/Download：6/2  |  Submit date：2024/07/22
CRISPR/Cas9  machine learning  lncRNA  sgRNA  
Genome-Wide Characterization of the INDETERMINATE DOMAIN (IDD) Zinc Finger Gene Family in Solanum lycopersicum and the Functional Analysis of SlIDD15 in Shoot Gravitropism 期刊论文
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2024, 卷号: 25, 期号: 19, 页码: -
Authors:  Wu, Huan;  Liu, Mingli;  Fang, Yuqi;  Yang, Jing;  Xie, Xiaoting;  Zhang, Hailong;  Zhou, Dian;  Zhou, Yueqiong;  He, Yexin;  Chen, Jianghua;  Bai, Quanzi
Adobe PDF(9072Kb)  |  Favorite  |  View/Download：5/2  |  Submit date：2024/11/19
IDD gene family  SlIDD15  gravitropism  Solanum lycopersicum  
Exploration of potential antidiabetic and antioxidant components from the branches of Mitragyna diversifolia and possible mechanism 期刊论文
BIOMEDICINE & PHARMACOTHERAPY, 2024, 卷号: 180, 期号: x, 页码: -
Authors:  Lu, Jing;  Wang, Hanlei;  Chen, Xuelin;  Zhang, Kun;  Zhao, Xia;  Xiao, Yunxue;  Yang, Fengxian;  Han, Mei;  Yuan, Wenyi;  Guo, Yuling;  Zhang, Yumei
Adobe PDF(10468Kb)  |  Favorite  |  View/Download：3/2  |  Submit date：2024/11/19
Mitragyna diversifolia  Antidiabetic  Antioxidant  alpha-glucosidase  Network pharmacology  Molecular docking