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TetraRNA, a tetra-class machine learning model for deciphering the coding potential derivation of RNA world 期刊论文
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 2025, 卷号: 27, 期号: x, 页码: 1305-1317
Authors:  Bai, Hanrui;  Wang, Jie;  Jiang, Xiaoke;  Guo, Zhen;  Yang, Wenjing;  Yang, Zitian;  Li, Jing;  Liu, Changning
Adobe PDF(7282Kb)  |  Favorite  |  View/Download：6/1  |  Submit date：2025/05/21
Translated ncRNA  Untranslated mRNA  CncRNA  Tetra-class classification model  TetraRNADB database  
Multidimensional analysis of long noncoding RNAs function in Solanaceae plants 期刊论文
NEW PHYTOLOGIST, 2025, 卷号: 247, 期号: 3, 页码: 1041-1059
Authors:  Yang, Wenjing;  Bai, Quanzi;  Zhang, Xuan;  Chen, Wen;  Cai, Ankang;  Li, Jing;  Gao, Xiaoyang;  Yao, Baolin;  Liu, Jiazhi;  Li, Yan;  Chen, Jianghua;  Liu, Changning
Adobe PDF(4116Kb)  |  Favorite  |  View/Download：12/5  |  Submit date：2025/07/10
FRUIT-DEVELOPMENT  EXPRESSION  LNCRNAS  TRANSCRIPTOME  ARABIDOPSIS  ANNOTATION  PROFILES  NETWORK  GROWTH  ROLES  
EupDB: An integrative and comprehensive functional genomics data hub for Euphorbiaceae plants 期刊论文
PLANT COMMUNICATIONS, 2024, 卷号: 5, 期号: 1, 页码: -
Authors:  Liu, Jiazhi;  Li, Yan;  Li, Jing;  Chen, Wen;  Pan, Bangzhen;  Liu, Aizhong;  Xu, Zeng-Fu;  Xu, Wei;  Liu, Changning
Adobe PDF(1201Kb)  |  Favorite  |  View/Download：9/4  |  Submit date：2024/03/11
CRISPRlnc: a machine learning method for lncRNA-specific single-guide RNA design of CRISPR/Cas9 system 期刊论文
BRIEFINGS IN BIOINFORMATICS, 2024, 卷号: 25, 期号: 2, 页码: _
Authors:  Yang, Zitian;  Zhang, Zexin;  Li, Jing;  Chen, Wen;  Liu, Changning
Adobe PDF(2743Kb)  |  Favorite  |  View/Download：6/2  |  Submit date：2024/07/22
CRISPR/Cas9  machine learning  lncRNA  sgRNA  
Three QTL from Oryza meridionalis Could Improve Panicle Architecture in Asian Cultivated Rice 期刊论文
RICE, 2023, 卷号: 16, 期号: 1, 页码: -
Authors:  Yang, Ying;  Zhang, Yu;  Li, Jing;  Xu, Peng;  Wu, Zhijuan;  Deng, Xianneng;  Pu, Qiuhong;  Lv, Yonggang;  Elgamal, Walid Hassan Ali Soliman;  Maniruzzaman, Sheikh;  Deng, Wei;  Zhou, Jiawu;  Tao, Dayun
Adobe PDF(3605Kb)  |  Favorite  |  View/Download：10/3  |  Submit date：2023/06/09
QUANTITATIVE TRAIT LOCI  ADVANCED BACKCROSS POPULATION  GRAIN-YIELD  MORPHOLOGICAL TRAITS  NATURAL VARIATION  IDENTIFICATION  GENOME  COMPONENTS  RUFIPOGON  ORIGIN  
RNA-Seq analysis reveals the important co-expressed genes associated with polyphyllin biosynthesis during the developmental stages of Paris polyphylla 期刊论文
BMC GENOMICS, 2022, 卷号: 23, 期号: SUPPL 1, 页码: -
Authors:  Gao, Xiaoyang;  Su, Qixuan;  Li, Jing;  Yang, Wenjing;  Yao, Baolin;  Guo, Jiawei;  Li, Shengying;  Liu, Changning
Adobe PDF(7013Kb)  |  Favorite  |  View/Download：10/4  |  Submit date：2022/09/21
Polyphyllin concentration  Spatiotemporal gene expression  Developmental stage  Polyphyllin biosynthesis  Gene co-expression network  
PPDP: A Data Portal of Paris polyphylla for Polyphyllin Biosynthesis and Germplasm Resource Exploration 期刊论文
DIVERSITY-BASEL, 2022, 卷号: 14, 期号: 12, 页码: -
Authors:  Su, Qixuan;  Zhang, Xuan;  Li, Jing;  Yang, Wenjing;  Ren, Qiang;  Gao, Xiaoyang;  Liu, Changning
Adobe PDF(3105Kb)  |  Favorite  |  View/Download：8/2  |  Submit date：2023/03/01
Paris polyphylla  polyphyllin  germplasm resource  database  
Phenology-related water-use efficiency and its responses to site heterogeneity in rubber plantations in Southwest China 期刊论文
EUROPEAN JOURNAL OF AGRONOMY, 2022, 卷号: 137, 期号: x, 页码: -
Authors:  Lin, Youxing;  Zhang, Yiping;  Zhou, Liguo;  Li, Jing;  Zhou, Ruiwu;  Guan, Huiling;  Zhang, Jin;  Sha, Liqing;  Song, Qinghai
Adobe PDF(3242Kb)  |  Favorite  |  View/Download：10/5  |  Submit date：2022/06/21
Rubber  Phenology  Biometric survey  Sap flow  Site heterogeneity  Planting density  Stand age  
Hail event rather than cold stress, has profound effects on the carbon-water coupling process of Hevea brasiliensis in Xishuangbanna 期刊论文
INDUSTRIAL CROPS AND PRODUCTS, 2022, 卷号: 175, 期号: x, 页码: -
Authors:  Lin, Youxing;  Zhang, Yiping;  Zhao, Wei;  Zhou, Liguo;  Li, Jing;  Fei, Xuehai;  Gao, Jinbo;  Sha, Liqing;  Song, Qinghai
Adobe PDF(4544Kb)  |  Favorite  |  View/Download：23/5  |  Submit date：2022/01/04
Water-use efficiency  Cold stress  Hail event  Plant and ecosystem scales  Eddy covariance  delta C-13 value  
Extended mining of the oil biosynthesis pathway in biofuel plant Jatropha curcas by combined analysis of transcriptome and gene interactome data 期刊论文
BMC BIOINFORMATICS, 2021, 卷号: 22, 期号: SUPPL 6, 页码: -
Authors:  Zhang, Xuan;  Li, Jing;  Pan, Bang-Zhen;  Chen, Wen;  Chen, Maosheng;  Tang, Mingyong;  Xu, Zeng-Fu;  Liu, Changning
Adobe PDF(1787Kb)  |  Favorite  |  View/Download：40/3  |  Submit date：2021/09/08
Extended mining  Oil biosynthesis  Jatropha curcas  Transcriptome  Gene interactome