| Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata) | |
| Liu, Detuan1,2; Tian, Xiaoling3; Shao, Shicheng4; Ma, Yongpeng1; Zhang, Rengang1,2 | |
| 2023 | |
| Source Publication | SCIENTIFIC DATA
 |
| ISSN | 2052-4463 |
| Volume | 10Issue:1Pages:- |
| Abstract | Microcos paniculata is a shrub used traditionally as folk medicine and to make herbal teas. Previous research into this species has mainly focused on its chemical composition and medicinal value. However, the lack of a reference genome limits the study of the molecular mechanisms of active compounds in this species. Here, we assembled a haplotype-resolved chromosome-level genome of M. paniculata based on PacBio HiFi and Hi-C data. The assembly contains two haploid genomes with sizes 399.43 Mb and 393.10 Mb, with contig N50 lengths of 43.44 Mb and 30.17 Mb, respectively. About 99.93% of the assembled sequences could be anchored to 18 pseudo-chromosomes. Additionally, a total of 482 Mb repeat sequences were identified, accounting for 60.76% of the genome. A total of 49,439 protein-coding genes were identified, of which 48,979 (99%) were functionally annotated. This haplotype-resolved chromosome-level assembly and annotation of M. paniculata will serve as a valuable resource for investigating the biosynthesis and genetic basis of active compounds in this species, as well as advancing evolutionary phylogenomic studies in Malvales. |
| Subject Area | Science & Technology - Other Topics |
| DOI | 10.1038/s41597-023-02821-9 |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:001127198200001 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | https://ir.xtbg.ac.cn/handle/353005/14047 |
| Collection | 2012年后新成立研究组 |
| Affiliation | 1.Chinese Acad Sci, Kunming Inst Bot, Yunnan Key Lab Integrat Conservat Plant Species Ex, Kunming 650201, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, CAS Key Lab Plant Divers & Biogeog East Asia, Kunming 650201, Peoples R China 3.Univ Chinese Acad Sci, Beijing 101408, Peoples R China 4.Yunnan Univ, Inst Int Rivers & Ecosecur, Kunming 650500, Peoples R China 5.Chinese Acad Sci, CAS Key Lab Trop Forest Ecol, Xishuangbanna Trop Bot Garden, Mengla 666303, Peoples R China |
| Recommended Citation GB/T 7714 | Liu, Detuan,Tian, Xiaoling,Shao, Shicheng,et al. Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)[J]. SCIENTIFIC DATA,2023,10(1):-. |
| APA | Liu, Detuan,Tian, Xiaoling,Shao, Shicheng,Ma, Yongpeng,&Zhang, Rengang.(2023).Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata).SCIENTIFIC DATA,10(1),-. |
| MLA | Liu, Detuan,et al."Haplotype-resolved chromosomal-level genome assembly of Buzhaye (Microcos paniculata)".SCIENTIFIC DATA 10.1(2023):-. |
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| Haplotype-resolved c（6049KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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