The Complete Plastid Genome Sequences of the Belian (Eusideroxylon zwageri): Comparative Analysis and Phylogenetic Relationships with Other Magnoliids | |
Zhu, Wen; Tan, Yunhong1,2![]() | |
2023 | |
Source Publication | FORESTS
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ISSN | 1999-4907 |
Volume | 14Issue:12Pages:- |
Abstract | The Belian (Eusideroxylon zwageri Teijsm. & Binn.) is a commercially important timber species in Southeast Asia that was listed on the IUCN Red List of threatened species in 1998. Six years ago, we published an article in Genome Biology Ecology entitled Evolutionary Comparisons of the Chloroplast Genome in Lauraceae and Insights into Loss Events in the Magnoliids in which one complete plastid genome of Belian was assembled for comparative analyses of the plastomes in Lauraceae. However, a recent study concluded that our sequenced Belian individual can be located in the clade of Myristicaceae instead of that of Lauraceae. Here, we performed reanalyses of an additional two Belian plastomes, along with 42 plastomes from plants spanning 10 families of the Magnoliids. The three Belian plastomes are 39% CG and vary in length from 157,535 to 157,577 bp. A total of 37 tRNA genes, 8 rRNA genes, and 85 protein-coding genes were among the 130 annotated genes. There were 95-101 repeat sequences and 56-61 simple repeat sequences (SSRs). Comparative genomic analysis revealed 170 mutation sites in their plastomes, which include 111 substitutions, 53 indels, and 6 microinversions. Phylogeny was reconstructed using maximum-likelihood and Bayesian approaches for 44 magnoliids species, indicating that the 3 Belian individuals were nested among the species in the Lauraceae family rather than Myristicaceae. |
Keyword | chloroplast genome comparative genomics Eusideroxylon Lauraceae phylogenetic relationships |
Subject Area | Forestry |
DOI | 10.3390/f14122443 |
Indexed By | SCI |
Language | 英语 |
WOS ID | WOS:001132274200001 |
Citation statistics | |
Document Type | 期刊论文 |
Identifier | https://ir.xtbg.ac.cn/handle/353005/14035 |
Collection | 2012年后新成立研究组 |
Affiliation | 1.Southwest Forestry Univ, Southwest Res Ctr Landscape Architecture Engn, Natl Forestry & Grassland Adm, Kunming 650224, Peoples R China 2.Chinese Acad Sci, Ctr Integrat Conservat, Xishuangbanna Trop Bot Garden, Mengla 666303, Peoples R China 3.Chinese Acad Sci, Southeast Asia Biodivers Res Inst, Yezin 05282, Nay Pyi Taw, Myanmar 4.Chinese Acad Sci, South China Bot Garden Herbarium, Guangzhou 510650, Peoples R China 5.Guangxi Normal Univ, Key Lab Ecol Rare & Endangered Species & Environm, Minist Educ, Guilin 541004, Peoples R China 6.Guangxi Normal Univ, Guangxi Key Lab Landscape Resources Conservat & Su, Guilin 541004, Peoples R China |
Recommended Citation GB/T 7714 | Zhu, Wen,Tan, Yunhong,Zhou, Xinxin,et al. The Complete Plastid Genome Sequences of the Belian (Eusideroxylon zwageri): Comparative Analysis and Phylogenetic Relationships with Other Magnoliids[J]. FORESTS,2023,14(12):-. |
APA | Zhu, Wen,Tan, Yunhong,Zhou, Xinxin,Song, Yu,&Xin, Peiyao.(2023).The Complete Plastid Genome Sequences of the Belian (Eusideroxylon zwageri): Comparative Analysis and Phylogenetic Relationships with Other Magnoliids.FORESTS,14(12),-. |
MLA | Zhu, Wen,et al."The Complete Plastid Genome Sequences of the Belian (Eusideroxylon zwageri): Comparative Analysis and Phylogenetic Relationships with Other Magnoliids".FORESTS 14.12(2023):-. |
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