| A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set | |
| Maurin, Olivier; Anest, Artemis2; Bellot, Sidonie; Biffin, Edward; Brewer, Grace; Charles-Dominique, Tristan; Cowan, Robyn S.; Dodsworth, Steven6; Epitawalage, Niroshini; Gallego, Berta; Giaretta, Augusto7; Goldenberg, Renato8; Goncalves, Deise J. P.; Graham, Shirley10; Hoch, Peter10; Mazine, Fiorella11; Low, Yee Wen13; McGinnie, Catherine; Michelangeli, Fabian A.; Morris, Sarah; Penneys, Darin S.; Perez Escobar, Oscar Alejandro; Pillon, Yohan16; Pokorny, Lisa17; Shimizu, Gustavo18; Staggemeier, Vanessa G.; Thornhill, Andrew H.; Tomlinson, Kyle W.; Turner, Ian M.; Vasconcelos, Thais22; Wilson, Peter G.; Zuntini, Alexandre R.; Baker, William J.; Forest, Felix; Lucas, Eve | |
| 2021 | |
| Source Publication | AMERICAN JOURNAL OF BOTANY
 |
| ISSN | 0002-9122 |
| Volume | 108Issue:7Pages:1087-1111 |
| Abstract | Premise To further advance the understanding of the species-rich, economically and ecologically important angiosperm order Myrtales in the rosid clade, comprising nine families, approximately 400 genera and almost 14,000 species occurring on all continents (except Antarctica), we tested the Angiosperms353 probe kit. Methods We combined high-throughput sequencing and target enrichment with the Angiosperms353 probe kit to evaluate a sample of 485 species across 305 genera (76% of all genera in the order). Results Results provide the most comprehensive phylogenetic hypothesis for the order to date. Relationships at all ranks, such as the relationship of the early-diverging families, often reflect previous studies, but gene conflict is evident, and relationships previously found to be uncertain often remain so. Technical considerations for processing HTS data are also discussed. Conclusions High-throughput sequencing and the Angiosperms353 probe kit are powerful tools for phylogenomic analysis, but better understanding of the genetic data available is required to identify genes and gene trees that account for likely incomplete lineage sorting and/or hybridization events. |
| Keyword | Alzateaceae Combretaceae Crypteroniaceae Lythraceae Melastomataceae Myrtaceae Onagraceae Penaeaceae phylogenomics Vochysiaceae |
| Subject Area | Plant Sciences |
| DOI | 10.1002/ajb2.1699 |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:000676117100001 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | https://ir.xtbg.ac.cn/handle/353005/12326 |
| Collection | 2012年后新成立研究组 |
| Affiliation | 1.Royal Bot Gardens, Richmond TW9 3AE, Surrey, England 2.Anest, Artemis; Tomlinson, Kyle W.] Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Ctr Integrat Conservat, Menglun 666303, Yunnan, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Biffin, Edward; Thornhill, Andrew H.] Univ Adelaide, Fac Sci, Sch Biol Sci, Adelaide, SA 5005, Australia 5.Biffin, Edward; Thornhill, Andrew H.] State Herbarium South Australia, POB 1047, Adelaide, SA 5001, Australia 6.Sorbonne Univ, CNRS, 4 Pl Jussieu, F-75005 Paris, France 7.Univ Bedfordshire, Sch Life Sci, Univ Sq, Luton LU1 3JU, Beds, England 8.Univ Fed Grande Dourados UFGD, Fac Ciencias Biol & Ambientais, Dourados, MS, Brazil 9.Univ Fed Parana, Dept Bot, Curitiba, Parana, Brazil 10.Goncalves, Deise J. P.] Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA 11.Missouri Bot Garden, St Louis, MO 63110 USA 12.Univ Fed Sao Carlos, Ctr Ciencias & Tecnol Sustentabilidade, Dept Ciencias Ambientais, Campus Sorocaba, BR-18052780 Sorocaba, SP, Brazil 13.Low, Yee Wen; Turner, Ian M.] Natl Pk Board, Singapore Bot Gardens, 1 Cluny Rd, Singapore 259569, Singapore 14.Univ Aberdeen, Sch Biol Sci, Aberdeen AB24 3UU, Scotland 15.Michelangeli, Fabian A.] New York Bot Garden, Inst Systemat Bot, Bronx, NY 10458 USA 16.Penneys, Darin S.] Univ N Carolina, Dept Biol & Marine Biol, Wilmington, NC 28403 USA 17.Univ Montpellier, Inst Agro, CIRAD, LSTM,IRD,INRAE, Montpellier, France 18.UPM, INIA, Ctr Plant Biotechnol & Genom, CBGP, Autopista M-40,Km 38, Pozuelo De Alarcon 28223, Madrid, Spain 19.Univ Estadual Campinas, Dept Plant Biol, BR-13083970 Campinas, SP, Brazil 20.Staggemeier, Vanessa G.] Univ Fed Rio Grande do Norte, Ctr Biociencias, Dept Ecol, BR-59078970 Natal, RN, Brazil 21.Tomlinson, Kyle W.] Chinese Acad Sci, Core Bot Gardens, Ctr Conservat Biol, Mengla 666303, Yunnan, Peoples R China 22.Turner, Ian M.] Royal Bot Gardens, Richmond TW9 3AB, Surrey, England 23.Univ Arkansas, Dept Biol Sci, Fayetteville, AR 72701 USA 24.Wilson, Peter G.] Royal Bot Gardens Sydney, Mrs Macquaries Rd, Sydney, NSW 2000, Australia |
| Recommended Citation GB/T 7714 | Maurin, Olivier,Anest, Artemis,Bellot, Sidonie,et al. A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set[J]. AMERICAN JOURNAL OF BOTANY,2021,108(7):1087-1111. |
| APA | Maurin, Olivier.,Anest, Artemis.,Bellot, Sidonie.,Biffin, Edward.,Brewer, Grace.,...&Lucas, Eve.(2021).A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set.AMERICAN JOURNAL OF BOTANY,108(7),1087-1111. |
| MLA | Maurin, Olivier,et al."A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set".AMERICAN JOURNAL OF BOTANY 108.7(2021):1087-1111. |
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| A nuclear phylogenom（7218KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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