| Chromosome-level genome assembly of Nothapodytes nimmoniana | |
Wang, Jiahui1,2; Ma, Xiaojie1,2; Yang, Xingyu1,2; Yang, Danni1; Huang, Tianping1; Yang, Yunqiang1; Yang, Yongping1
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| 2025 | |
| Source Publication | SCIENTIFIC DATA
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| ISSN | 2052-4463 |
| Volume | 12Issue:1Pages:- |
| Abstract | Nothapodytes nimmoniana is a plant species belonging to the genus Nothapodytes in the family Icacinaceae. This species holds significant medicinal value due to its camptothecin content. In this study, we present the first chromosome-level genome assembly of N. nimmoniana constructed using NGS, Hi-C, and HiFi sequencing technologies. The assembled genome spans 3.53 Gb across 14 chromosomes, with an N50 length of 248.74 Mb. Genome annotation revealed that repetitive sequences constitute 80.82% of the genome size, and 83,269 protein-coding genes were predicted. Additionally, 4,360,538 bp of non-coding RNA were annotated. This genomic resource provides a foundation for further investigation into camptothecin biosynthesis pathways and plant phylogeny in N. nimmoniana. |
| Keyword | HI-C CAMPTOTHECIN GENE IDENTIFICATION FAMILIES |
| Subject Area | Multidisciplinary Sciences |
| DOI | 10.1038/s41597-025-05484-w |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:001524523400001 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | https://ir.xtbg.ac.cn/handle/353005/15701 |
| Collection | 2012年后新成立研究组 |
| Affiliation | 1.Chinese Acad Sci, Yunnan Int Joint Lab Conservat & Utilizat Trop Tim, Xishuangbanna Trop Bot Garden, Mengla 666303, Yunnan, Peoples R China 2.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Mengla 666303, Yunnan, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
| Recommended Citation GB/T 7714 | Wang, Jiahui,Ma, Xiaojie,Yang, Xingyu,et al. Chromosome-level genome assembly of Nothapodytes nimmoniana[J]. SCIENTIFIC DATA,2025,12(1):-. |
| APA | Wang, Jiahui.,Ma, Xiaojie.,Yang, Xingyu.,Yang, Danni.,Huang, Tianping.,...&Yang, Yongping.(2025).Chromosome-level genome assembly of Nothapodytes nimmoniana.SCIENTIFIC DATA,12(1),-. |
| MLA | Wang, Jiahui,et al."Chromosome-level genome assembly of Nothapodytes nimmoniana".SCIENTIFIC DATA 12.1(2025):-. |
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| Chromosome-level gen（2893KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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