| A high-quality chromosome-level genome assembly of herbaceous bamboo species Lithachne pauciflora | |
| Qian, Ke-Cheng; Liu, Jun-Feng; Yang, Yang; Guo, Cen2,3; Guo, Zhen-Hua | |
| 2025 | |
| Source Publication | SCIENTIFIC DATA
 |
| ISSN | 2052-4463 |
| Volume | 12Issue:1Pages:- |
| Abstract | Lithachne pauciflora is a herbaceous bamboo species characterized by its short height, low degree of lignification, and dimorphic florets, making it a special model for studying the key trait evolution in bamboo. Here, we assembled a high-quality, chromosome-level genome of L. pauciflora by integrating PacBio HiFi long reads, short reads, and Hi-C technology. The final genome assembly is 1.7 Gb with a scaffold N50 of 147.73 Mb. 99.3% of sequences were anchored onto 11 pseudo-chromosomes, with a BUSCO score of 98.6% and LAI value of 21. The total length of repeat elements is 1.43 Gb, accounting for 84.02% of the whole genome assembly. We annotated 32,696 protein-coding genes, of which 94.8% received functional annotations. This genome assembly of L. pauciflora provides valuable insights into chromosomal evolution and key trait evolution in herbaceous bamboo. |
| Keyword | RNA-SEQ ANNOTATION AUGUSTUS PROVIDES SYSTEM |
| Subject Area | Multidisciplinary Sciences |
| DOI | 10.1038/s41597-025-06024-2 |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:001606746300004 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | https://ir.xtbg.ac.cn/handle/353005/15700 |
| Collection | 2012年后新成立研究组 |
| Affiliation | 1.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species & Yunnan Key Lab Crop, Kunming 650201, Yunnan, Peoples R China 2.Univ Chinese Acad Sci, Kunming Coll Life Sci, Kunming 650201, Yunnan, Peoples R China 3.Chinese Acad Sci, Ctr Integrat Conservat, Xishuangbanna Trop Bot Garden, Mengla 666303, Yunnan, Peoples R China 4.Chinese Acad Sci, Yunnan Key Lab Conservat Trop Rainforests & Asian, Xishuangbanna Trop Bot Garden, Mengla 666303, Yunnan, Peoples R China |
| Recommended Citation GB/T 7714 | Qian, Ke-Cheng,Liu, Jun-Feng,Yang, Yang,et al. A high-quality chromosome-level genome assembly of herbaceous bamboo species Lithachne pauciflora[J]. SCIENTIFIC DATA,2025,12(1):-. |
| APA | Qian, Ke-Cheng,Liu, Jun-Feng,Yang, Yang,Guo, Cen,&Guo, Zhen-Hua.(2025).A high-quality chromosome-level genome assembly of herbaceous bamboo species Lithachne pauciflora.SCIENTIFIC DATA,12(1),-. |
| MLA | Qian, Ke-Cheng,et al."A high-quality chromosome-level genome assembly of herbaceous bamboo species Lithachne pauciflora".SCIENTIFIC DATA 12.1(2025):-. |
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| A high-quality chrom（2845KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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