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A chromosome-level genome assembly of Ficus benjamina, a fig tree with great ecological and ornamental value
Liao, Shuai1,2,3; Zhang, Zhen3; Yang, Chenxuan4; Gardner, Elliot M.; Peng, Yanqiong6; Xiong, Yongmei1; Dai, Seping1; Deng, Yunfei2
2025
Source PublicationSCIENTIFIC DATA
ISSN2052-4463
Volume12Issue:1Pages:-
Abstract

Ficus benjamina, the weeping fig, is one of the most widely distributed and cultivated figs, with important ecological functions and landscape value. However, the lack of a reference genome has hindered molecular and functional research on this well-known fig-tree. Here we present a chromosome-scale genome assembly and annotation for F. benjamina, based on a combination of Illumina short-reads, PacBio subreads, and Hi-C sequencing data. The genome consists of 13 pseudochromosomes that contain 362.73 Mb of assembled sequences, with a contig N50 length of 25.76 Mb and a complete BUSCO score of 98.10%. In total, 28,840 protein-coding genes were identified, of which 96.22% were functionally annotated. Our study provides the first chromosome-level genome of F. benjamina, providing an important resource for exploring the genetic basis of its ecological and horticultural characters.

KeywordHI-C DIVERSITY ALIGNMENT PROVIDES MORACEAE SYSTEM
Subject AreaScience & Technology - Other Topics
DOI10.1038/s41597-025-05155-w
Indexed BySCI
Language英语
WOS IDWOS:001491605400004
Citation statistics
Document Type期刊论文
Identifierhttps://ir.xtbg.ac.cn/handle/353005/14771
Collection协同进化组
Affiliation1.Chinese Acad Sci, State Key Lab Plant Divers & Specialty Crops, South China Bot Garden, Guangzhou 510650, Peoples R China
2.Guangzhou Inst Forestry & Landscape Architecture, Guangzhou Int Ficus Res Ctr, Guangzhou 510405, Peoples R China
3.Key Lab Natl Forestry & Grassland Adm Plant Conser, Guangzhou 510650, Peoples R China
4.Shanghai Chenshan Bot Garden, Eastern China Conservat Ctr Wild Endangered Plant, Shanghai 201602, Peoples R China
5.Chinese Acad Sci, Kunming Inst Bot, Yunnan Key Lab Crop Wild Relat Om, Germplasm Bank Wild Species, Kunming 650201, Peoples R China
6.Gardner, Elliot M.] Case Western Reserve Univ, Dept Biol, Cleveland, OH 44106 USA
7.Chinese Acad Sci, State Key Lab Plant Divers & Specialty Crops, Xishuangbanna Trop Bot Garden, Mengla 666303, Peoples R China
Recommended Citation
GB/T 7714
Liao, Shuai,Zhang, Zhen,Yang, Chenxuan,et al. A chromosome-level genome assembly of Ficus benjamina, a fig tree with great ecological and ornamental value[J]. SCIENTIFIC DATA,2025,12(1):-.
APA Liao, Shuai.,Zhang, Zhen.,Yang, Chenxuan.,Gardner, Elliot M..,Peng, Yanqiong.,...&Deng, Yunfei.(2025).A chromosome-level genome assembly of Ficus benjamina, a fig tree with great ecological and ornamental value.SCIENTIFIC DATA,12(1),-.
MLA Liao, Shuai,et al."A chromosome-level genome assembly of Ficus benjamina, a fig tree with great ecological and ornamental value".SCIENTIFIC DATA 12.1(2025):-.
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