| A chromosome-level genome assembly of Ficus benjamina, a fig tree with great ecological and ornamental value | |
Liao, Shuai1,2,3; Zhang, Zhen3; Yang, Chenxuan4; Gardner, Elliot M.; Peng, Yanqiong6 ; Xiong, Yongmei1; Dai, Seping1; Deng, Yunfei2
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| 2025 | |
| Source Publication | SCIENTIFIC DATA
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| ISSN | 2052-4463 |
| Volume | 12Issue:1Pages:- |
| Abstract | Ficus benjamina, the weeping fig, is one of the most widely distributed and cultivated figs, with important ecological functions and landscape value. However, the lack of a reference genome has hindered molecular and functional research on this well-known fig-tree. Here we present a chromosome-scale genome assembly and annotation for F. benjamina, based on a combination of Illumina short-reads, PacBio subreads, and Hi-C sequencing data. The genome consists of 13 pseudochromosomes that contain 362.73 Mb of assembled sequences, with a contig N50 length of 25.76 Mb and a complete BUSCO score of 98.10%. In total, 28,840 protein-coding genes were identified, of which 96.22% were functionally annotated. Our study provides the first chromosome-level genome of F. benjamina, providing an important resource for exploring the genetic basis of its ecological and horticultural characters. |
| Keyword | HI-C DIVERSITY ALIGNMENT PROVIDES MORACEAE SYSTEM |
| Subject Area | Science & Technology - Other Topics |
| DOI | 10.1038/s41597-025-05155-w |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:001491605400004 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | https://ir.xtbg.ac.cn/handle/353005/14771 |
| Collection | 协同进化组 |
| Affiliation | 1.Chinese Acad Sci, State Key Lab Plant Divers & Specialty Crops, South China Bot Garden, Guangzhou 510650, Peoples R China 2.Guangzhou Inst Forestry & Landscape Architecture, Guangzhou Int Ficus Res Ctr, Guangzhou 510405, Peoples R China 3.Key Lab Natl Forestry & Grassland Adm Plant Conser, Guangzhou 510650, Peoples R China 4.Shanghai Chenshan Bot Garden, Eastern China Conservat Ctr Wild Endangered Plant, Shanghai 201602, Peoples R China 5.Chinese Acad Sci, Kunming Inst Bot, Yunnan Key Lab Crop Wild Relat Om, Germplasm Bank Wild Species, Kunming 650201, Peoples R China 6.Gardner, Elliot M.] Case Western Reserve Univ, Dept Biol, Cleveland, OH 44106 USA 7.Chinese Acad Sci, State Key Lab Plant Divers & Specialty Crops, Xishuangbanna Trop Bot Garden, Mengla 666303, Peoples R China |
| Recommended Citation GB/T 7714 | Liao, Shuai,Zhang, Zhen,Yang, Chenxuan,et al. A chromosome-level genome assembly of Ficus benjamina, a fig tree with great ecological and ornamental value[J]. SCIENTIFIC DATA,2025,12(1):-. |
| APA | Liao, Shuai.,Zhang, Zhen.,Yang, Chenxuan.,Gardner, Elliot M..,Peng, Yanqiong.,...&Deng, Yunfei.(2025).A chromosome-level genome assembly of Ficus benjamina, a fig tree with great ecological and ornamental value.SCIENTIFIC DATA,12(1),-. |
| MLA | Liao, Shuai,et al."A chromosome-level genome assembly of Ficus benjamina, a fig tree with great ecological and ornamental value".SCIENTIFIC DATA 12.1(2025):-. |
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| A chromosome-level g(2789KB) | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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