| Chromosome-level genome assembly of Hippophae rhamnoides variety | |
Yang, Xingyu1; Luo, Shujie2; Yang, Shihai3; Duoji, Ciren4; Wang, Qianwen; Chen, Zhiyu1,5,6; Yang, Danni; Yang, Tianyu1,5,6; Wan, Xi1; Yang, Yunqiang5,6; Liu, Tianmeng2; Yang, Yongping5,6
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| 2024 | |
| Source Publication | SCIENTIFIC DATA
 |
| ISSN | 2052-4463 |
| Volume | 11Issue:1Pages:- |
| Abstract | Fructus hippophae (Hippophae rhamnoides spp. mongolicaxHippophae rhamnoides sinensis), a hybrid variety of sea buckthorn that Hippophae rhamnoides spp. mongolica serves as the female parent and Hippophae rhamnoidessinensis serves as the male parent, is a traditional plant with great potentials of economic and medical values. Herein, we gained a chromosome-level genome of Fructus hippophae about 918.59 Mb, with the scaffolds N50 reaching 83.65 Mb. Then, we anchored 440 contigs with 97.17% of the total genome sequences onto 12 pseudochromosomes. Next, de-novo, homology and transcriptome assembly strategies were adopted for gene structure prediction. This predicted 36475 protein-coding genes, of which 36226 genes could be functionally annotated. Simultaneously, various strategies were used for quality assessment, both the complete BUSCO value (98.80%) and the mapping rate indicated the high assembly quality. Repetitive elements, which occupied 63.68% of the genome, and 1483600 bp of non-coding RNA were annotated. Here, we provide genomic information on female plants of a popular variety, which can provide data for pan-genomic construction of sea buckthorn and for the resolution of the mechanism of sex differentiation. |
| Keyword | INDUCED INFLAMMATORY RESPONSE SUPPLEMENT TREMBL L. BERRIES SEABUCKTHORN TOOL ANTIOXIDANT FLAVONOIDS SYSTEM GENE |
| Subject Area | Multidisciplinary Sciences |
| DOI | 10.1038/s41597-024-03549-w |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:001272463300002 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | https://ir.xtbg.ac.cn/handle/353005/14344 |
| Collection | 2012年后新成立研究组 |
| Affiliation | 1.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Kunming 650000, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Dali Univ, Dali 671000, Peoples R China 4.Yunwang Ind Corp Ltd, Tibet 850000, Peoples R China 5.Serv Ctr Forestry & Grassland Bur Sangzhuzi Dist X, Xizang 850000, Peoples R China 6.Chinese Acad Sci, Kunming Inst Bot, Plant Germplasm & Genom Ctr, Kunming 650201, Peoples R China 7.Chinese Acad Sci, Inst Tibetan Plateau Res Kunming, Kunming Inst Bot, Kunming 650201, Peoples R China |
| Recommended Citation GB/T 7714 | Yang, Xingyu,Luo, Shujie,Yang, Shihai,et al. Chromosome-level genome assembly of Hippophae rhamnoides variety[J]. SCIENTIFIC DATA,2024,11(1):-. |
| APA | Yang, Xingyu.,Luo, Shujie.,Yang, Shihai.,Duoji, Ciren.,Wang, Qianwen.,...&Yang, Yongping.(2024).Chromosome-level genome assembly of Hippophae rhamnoides variety.SCIENTIFIC DATA,11(1),-. |
| MLA | Yang, Xingyu,et al."Chromosome-level genome assembly of Hippophae rhamnoides variety".SCIENTIFIC DATA 11.1(2024):-. |
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| Chromosome-level gen（1639KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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