| Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae) | |
Chen, Bao-Zheng; Yang, Zi-Jiang; Wang, Wei-Bin; Hao, Ting-Ting; Yu, Peng-Ban; Dong, Yang4; Yu, Wen-Bin
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| 2024 | |
| Source Publication | SCIENTIFIC DATA
 |
| ISSN | 2052-4463 |
| Volume | 11Issue:1Pages:- |
| Abstract | Flueggea virosa (Roxb. ex Willd.) Royle, an evergreen shrub and small tree in the Phyllanthaceae family, holds significant potential in garden landscaping and pharmacological applications. However, the lack of genomic data has hindered further scientific understanding of its horticultural and medicinal values. In this study, we have assembled a haplotype-resolved genome of F. virosa for the first time. The two haploid genomes, named haplotype A genome and haplotype B genome, are 487.33 Mb and 477.53 Mb in size, respectively, with contig N50 lengths of 31.45 Mb and 32.81 Mb. More than 99% of the assembled sequences were anchored to 13 pairs of pseudo-chromosomes. Furthermore, 21,587 and 21,533 protein-coding genes were predicted in haplotype A and haplotype B genomes, respectively. The availability of this chromosome-level genome fills the gap in genomic data for F. virosa and provides valuable resources for molecular studies of this species, supporting future research on speciation, functional genomics, and comparative genomics within the Phyllanthaceae family. |
| Keyword | HI-C SEQUENCE PROVIDES TREE ALIGNMENTS ALKALOIDS EVOLUTION COVERAGE INSIGHTS UPDATE |
| Subject Area | Multidisciplinary Sciences |
| DOI | 10.1038/s41597-024-03681-7 |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:001291149500004 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | https://ir.xtbg.ac.cn/handle/353005/14319 |
| Collection | 2012年后新成立研究组 |
| Affiliation | 1.Yunnan Agr Univ, Coll Food Sci & Technol, Kunming 650201, Yunnan, Peoples R China 2.[Chen, Bao-Zheng 3.Wang, Wei-Bin 4.Hao, Ting-Ting 5.Yunnan Agr Univ, Yunnan Prov Key Lab Biol Big Data, Kunming 650201, Yunnan, Peoples R China 6.Wageningen Univ & Res, Bioinformat Grp, Wageningen, Netherlands 7.[Yu, Peng-Ban 8.Chinese Acad Sci, Ctr Integrat Conservat, Mengla 666303, Yunnan, Peoples R China 9.Chinese Acad Sci, Yunnan Key Lab Conservat Trop Rainforests & Asian, Xishuangbanna Trop Bot Garden, Mengla 666303, Yunnan, Peoples R China 10.Chinese Acad Sci, Southeast Asia Biodivers Res Inst, Mengla 666303, Yunnan, Peoples R China |
| Recommended Citation GB/T 7714 | Chen, Bao-Zheng,Yang, Zi-Jiang,Wang, Wei-Bin,et al. Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae)[J]. SCIENTIFIC DATA,2024,11(1):-. |
| APA | Chen, Bao-Zheng.,Yang, Zi-Jiang.,Wang, Wei-Bin.,Hao, Ting-Ting.,Yu, Peng-Ban.,...&Yu, Wen-Bin.(2024).Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae).SCIENTIFIC DATA,11(1),-. |
| MLA | Chen, Bao-Zheng,et al."Chromosome-level genome assembly and annotation of Flueggea virosa (Phyllanthaceae)".SCIENTIFIC DATA 11.1(2024):-. |
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| Chromosome-level gen（9541KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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