| The plastid genome of Herpetospermum pedunculosum (Cucurbitaceae), an endangered traditional Tibetan medicinal herbs | |
Wang, Chengwang; Wang, Xilong1 ; Tseringand, Tamdrin2; Song, Yu3; Zhu, Rongjie4
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| 2020 | |
| Source Publication | MITOCHONDRIAL DNA PART B-RESOURCES
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| ISSN | 2380-2359 |
| Volume | 5Issue:1Pages:495-497 |
| Abstract | Herpetospermum pedunculosum (Ser.) C. B. Clarke is an important traditional Tibetan medicinal plants in the genus of Herpetospermum, Cucurbitaceae. To better determine its phylogenetic location with respect to the other Cucurbitaceae species, the complete plastome of H. pedunculosum will be reported, which is the first species with plastid genome sequence in the genus of Herpetospermum. Its whole genome is 156,531 bp in length, consisting of a pair of inverted repeats (IRs) of 26,147 bp, one large single-copy (LSC) region of 85,878 bp, and one small single-copy (SSC) region of 18,359 bp. There are 128 genes, including 83 protein-coding genes, 36 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes in the plastome. Phylogenetic analysis based on 13 complete plastomes of Cucurbitaceae species showed sisterhood of H. pedunculosum and a clade containing Trichosanthes kirilowii and Hodgsonia macrocarpa, suggesting the close relationship between tribe Schizopeponeae and tribe Sicyoeae in the family Cucurbitaceae. |
| Keyword | Herpetospermum pedunculosum phylogenetic analysis Cucurbitaceae chloroplast genome |
| Subject Area | Genetics & Heredity |
| DOI | 10.1080/23802359.2019.1703603 |
| Indexed By | SCI |
| Language | 英语 |
| WOS ID | WOS:000506579000001 |
| Citation statistics | |
| Document Type | 期刊论文 |
| Identifier | https://ir.xtbg.ac.cn/handle/353005/11579 |
| Collection | 2012年后新成立研究组 |
| Affiliation | 1.Nanchang Univ, Sch Life Sci, Nanchang, Jiangxi, Peoples R China 2.Tibet Plateau Inst Biol, Xizang, Peoples R China 3.Technol Developmnet Exchange Serv Ctr Linzhi, Xizang, Peoples R China 4.Chinese Acad Sci, Ctr Integrat Conservat, Xishuangbanna Trop Bot Garden, Kunming, Yunnan, Peoples R China 5.Tibet Acad Agr & Anim Husb Sci, Inst Vegetable Sci, Xizang 850000, Peoples R China |
| Recommended Citation GB/T 7714 | Wang, Chengwang,Wang, Xilong,Tseringand, Tamdrin,et al. The plastid genome of Herpetospermum pedunculosum (Cucurbitaceae), an endangered traditional Tibetan medicinal herbs[J]. MITOCHONDRIAL DNA PART B-RESOURCES,2020,5(1):495-497. |
| APA | Wang, Chengwang,Wang, Xilong,Tseringand, Tamdrin,Song, Yu,&Zhu, Rongjie.(2020).The plastid genome of Herpetospermum pedunculosum (Cucurbitaceae), an endangered traditional Tibetan medicinal herbs.MITOCHONDRIAL DNA PART B-RESOURCES,5(1),495-497. |
| MLA | Wang, Chengwang,et al."The plastid genome of Herpetospermum pedunculosum (Cucurbitaceae), an endangered traditional Tibetan medicinal herbs".MITOCHONDRIAL DNA PART B-RESOURCES 5.1(2020):495-497. |
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| The plastid genome o（831KB） | 期刊论文 | 出版稿 | 开放获取 | CC BY-NC-SA | View Download | |
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